Ice, Life and Hydrogen Bonds

Ice, Life and Hydrogen Bonds

Sometimes I envy those who work in fields where they have the

luxury of postulating all kinds of theories that will never be

proved right or wrong. One example is the view held by some

that there are other universes than our own, each with their own

Big Bang. I can accept that. After all, it”s hard enough to try to

understand one Big Bang, so what”s a few more? However,

David Deutsch in England has proposed that we live in a

“multiverse”, a slew of universes in which each of us has twins,

each leading a completely different life. The September 2001

issue of Discover magazine has an article about Deutsch

describing him as one of the world”s leading theoretical

physicists. I”m no theoretical physicist but I find his theory hard

to swallow. But I”m pretty sure no one will ever prove him

wrong (or right!).

Another field where confirming a theory is pretty problematical

is the origins-of-life field. All kinds of theories have been

proposed as to how the first life appeared on earth. I doubt the

answer will be known in my lifetime, but it”s nice to see that

experiments are being done that support at least the feasibility of

certain suggested origins. What do we know? We know the

earth formed 4.5 billion years ago and that, amazingly, fossils of

tiny organisms have been found in rocks more than 3.5 billion

years old. Initially, the earth was hot and was bombarded with

so many asteroids and other space junk, that life would have

been unthinkable for a half billion years or so. Yet, within a few

hundred million years after that, cyanobacteria (the type

associated with pond slime) were thriving.

Something had to be present to permit these bacteria to form –

organic compounds. Without simple organics to start with, we

couldn”t have had the more complex amino acids and proteins

that form DNA and everything else composing a living thing.

How did the organics form? You need carbon, oxygen,

hydrogen and nitrogen for sure. In 1953, Stanley Miller, a

graduate student of Nobelist Harold Urey at the University of

Chicago, put methane, ammonia, and other gases in a flask with

some water and simulated lightning with electric sparks. He

figured this mixture was something like what would have been

present in the atmosphere 4 billion years ago. Sure enough, the

water turned brownish; amino acids and other organic molecules

were formed. I remember the sensation the experiment caused in

the media of the 1950s. Some commentators would have had

you believe that the creation of life in the laboratory was just

around the corner.

Problem solved? Not quite. These amino acids and other

compounds somehow had to come together to link up and stay

linked up in order for something approaching a living thing to be

formed and survive. Conditions on earth were still not conducive

to life, at least out in the open. Although Miller”s experiment

showed that organic compounds might have formed on earth,

many have felt that the source was comets from outer space

crashing into the earth. The questions then become could the

organics have formed in space and could they then survive the

trip to earth intact?

The answer to the first question is a resounding yes. Studies of

the spectra of cold gas clouds in outer space over the past decade

show that space is indeed loaded with many different organic

compounds and with lots of water. The particles of dust and

condensed gases in the cold molecular clouds of space also

contain frost rich in water ice. If particles like these come

together in a comet that plows into the earth, we”ve got the water

and the organics to put us in the life business.

So, we know the organics are out there. The second question is

could they survive the trip to earth over the thousands or millions

of years it takes the comet to get here? The August 2001 issue of

Scientific American has an article by David Blake and Peter

Jenniskens of NASA Ames Research Center that provides an

answer. The article”s title is “The Ice of Life” and shows how

that frosty water ice could have nurtured formation of the

organics and then cradled them on the long journey to earth.

To understand the article we need to know a little about water.

We know that water, with just two atoms of hydrogen and one of

oxygen, is about as simple a molecule as you can get, right?

Wrong! Water is an amazingly complex substance and it”s this

complexity that makes it such an interesting and important part

of our world. My well-worn 1945 edition of Linus Pauling”s

“Nature of the Chemical Bond” has some pertinent information.

For one thing, water”s structure is not H-O-H, with the atoms and

the bonds (-) all in line. Instead, the hydrogen atoms, and the

bonds are closer to being at right angles (actually 105 degrees) to

each other. This makes the structure sort of like an arrowhead,

with the oxygen at the point. Pauling also makes the point that

there”s some positive charge on the hydrogens and some negative

charge on the oxygen.

I know this doesn”t sound very exciting but these charges also

give rise to something hugely important. That negative charge

on the oxygen attracts a positively charged hydrogen from

another neighboring water molecule. The result is a weak bond

between that oxygen and the neighboring hydrogen, which is

strongly bonded to its own oxygen atom. This “hydrogen bond”

between its own oxygen and the oxygen in the neighboring water

molecule may not excite you either. But consider this. Pauling

shows that, without those hydrogen bonds, water would freeze at

minus 100 degrees Centigrade and boil at minus 80 degrees

Centigrade, not plus 100 C! You”d be dried up as a mummy!

Those hydrogen bonds are responsible for life as we know it.

Pauling also mentions that in certain forms of ice, because of the

weakness of these hydrogen bonds, at very low temperatures the

water molecules can rearrange themselves almost as though the

ice were liquid. And that”s the key point in the article by Blake

and Jenniskens of the NASA Ames Research Center.

The ordinary ice that we take out of the freezer and add to our

drinks is “hexagonal” ice. Its crystal structure consists of the

water molecules arranged in hexagons as in a beehive, an open

but rigid structure that rejects impurities or organic compounds.

Freeze tissues containing water and ice forms and tears the tissue

apart. Part of the problem is that when you freeze water, the ice

is less dense than liquid water and the water expands as it

freezes. That”s also why ice floats in your drink. In this

hexagonal ice, the hydrogen bonds are also locked up as part of

the crystal structure.

But there are other forms of ice. Ten years before Pauling”s book

appeared, researchers were slowly depositing water vapor on a

surface in vacuum. Instead of hexagonal structure, they found

the ice had no discernible structure! We call stuff like this

without any long-range order “amorphous”. You”re quite

familiar with amorphous stuff, that windowpane or the glass you

drink from, for example. Glass is an amorphous form of silica,

which can also be quite crystalline in the form of quartz.

Today, researchers know that out in space where it really gets

cold and where the dust particles may only be a hundred

thousandth of an inch thick, the water ice on these particles is

mostly amorphous. So, if these teensy particles have also

trapped gases like methane and ammonia, we have the

ingredients for making organic compounds. But hey, it”s cold out

there and this is ice, not liquid water! But Pauling said that

hydrogen bonds could form and rearrange in some forms of ice at

low temperatures.

This is just the opening we need. It”s been found that ultraviolet

radiation out in space can stimulate the hydrogen bond

wanderings. That rearrangement of hydrogen bonds allows the

other stuff trapped in the ice or at the surface to also mix a bit

and react. It”s very cold, near Absolute Zero, and the reactions

will be very slow. We”re not in a hurry though – we have tens or

hundreds of thousands of years to form these compounds before

the particles get caught up and condense into a comet and then

head for the earth.

The NASA Ames workers have deposited thin films of water on

a surface in vacuum in an electron microscope at very low

temperatures. They then followed what happens as the resulting

amorphous ice heats up. Their results translate to the following

scenario. At the extremely low temperatures near Absolute Zero,

ultraviolet radiation causes the ice to flow like water and organic

molecules are formed. As the ice heats up, the hydrogen bonds

break and re-form. This allows the organic molecules to get

together to form more complex compounds.

Now a surprising discovery – as the temperature goes higher the

ice begins to crystallize into a “cubic” form of ice. This could be

murder for the compounds but, the surprise, about two thirds of

the ice remains amorphous. So, if we have a comet with all these

compounds mixed in with the ice, as the comet approaches the

sun and earth and heats up, the compounds are still OK. Finally,

as the comet comes speeding down to hit the earth, it heats up to

the point where the ice becomes hexagonal ice and expels the

compounds. However, by this time the comet is near or on the

earth and the compounds are scattered around into the oceans,

available to form more exotic compounds. So, whether the

organics were made on earth or came from space, or both, we”ve

got the necessary ingredients for life. Next week, the next step.

Meanwhile, I can”t end without congratulating Brian Trumbore

on the best round of his life last week. I was witness to this

historic event. Brian was dropping putts in the cup from all over

the greens. I won”t reveal his score, except to note it was a mere

22 strokes lower than mine. Only a week before, I had taken

him by a stroke on the front nine of the same course! (No

comment on the second nine.)

Allen F. Bortrum